{
    "input":{
        "path": "/home/stimme/Programming/BacterialGrowth/Lorena",
        "simulate TSB control experiments separately": false,
        "use CFCM parameters as start points": false,
        "CFCM parameter paths": [],
        "fit CFU counts at 24h": false,
        "CFU counts per sample": false,
        "use CFU at 0h timepoint": false,
        "CFU 0h data path": "",
        "CFU 24h data path": ""
    },
    "output":{
        "path": "/scratch/stimme/Bacterial_CoInfection",
        "output folder add time stamp": false,
        "folder extension": "complexModel_ext2",
        "save raw data complete": false,
        "save raw data number best points": 100
    },
    "model":{
        "strain type": "CLIN",
        "experiment type": "CFCM",
        "condition": "Baseline",
        "model": "complex",
        "species": []
    },
    "fitting":{
        "boundaries":{
            "rg": [0.01,2],
            "C_start": [0.01,50],
            "C_end": [0.01,18],
            "p": [0.01,24],
            "g": [0.01, 5]
        },
        "number of start points": 100,
        "simulated annealing iterations": 10000,
        "get only min solution": false
    },
    "TSB":{
      "input":{
          "use CFCM parameters as start points": false,
          "fit CFU counts at 24h": false,
          "use CFU at 0h timepoint": false
      },
      "model":{
          "experiment type": "CFCM",
          "species": []
      }
    },
    "cpu":{
        "simulation location": "server",
        "number cpu": 255
    }
}