# IMFSegNet

Please visit [github repository](https://github.com/applied-systems-biology/sheepfat) for more information.

## Contents

* `data` contains all raw images, predictions and quantifications derived from the images
* `examples` contains example python scripts for the cross-validation and the corresponding training-test data
* `model` contains  all embedded image analysis workflows with the corresponding versions for JIPipe, ilastik, kmeans clustering and the IMFSegNet
* `sheepfat` contains all python scripts used to build and train the SegNet architecture as well as predict with it and the kmeans clustering
* `SheepFat.jip` contains the JIPipe project file which is used to process the raw images into quantitative results