IMFSegNet: Cost-effective and objective quantification of intramuscular fat in histological sections by deep learning

Jan-Philipp Praetorius, Kassandra Walluks, Carl-Magnus Svensson, Dirk Arnold, Marc Thilo Figge

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  1. PraetoriusEtAl2023_ComputStructBiotechnolJ
  2. data
  3. quantification
  4. tissue_mask
  5. H&E
  6. KW_manual-annotation
#Dataset=GTS01.1_OLD_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=GTS01.4_OLD_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=JTS01.3_FemurTest_H&E-10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 2 KB #Dataset=JTS04.3_PCAControl_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S34.3_DC07_H&E_10x_s3_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 3 KB #Dataset=S35.4_SHAM_H&E_10x_s3_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=S37.3_SHAM_H&E_10x_s2_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S41.1_Control_H&E_10x_s2_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S42.4_DC04_H&E_10x_s4_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=S43.4_H&E-Bild-Export-11_s2_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=S46.3_SHAM_H&E_10x_s2_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S47.4_SHAM_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=S50.4_SHAM_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S51.1_SHAM_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=S53.1_2_SHAM_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB #Dataset=UTS01.4_OP_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv 1 KB #Dataset=UTS02.1_OP_H&E_10x_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=40_Max Threshold B=256_Max Threshold S=256_Threshold=128.0.csv <1 KB

A comparative assessment to quantify intramuscular fat in H&E stained tissue sections