JIPipe: A graphical batch processing language for ImageJ

Ruman Gerst, Zoltán Cseresnyés,Marc Thilo Figge

A visual programming language based on ImageJ

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JIPipe

Please visit https://www.jipipe.org/ for more information!

Contents

  • protocols_only contains example pipelines with their data
  • protocols_and_outputs contains examnple pipelines with data and a copy of the results