MISA++: A standardized interface for automated bioimage analysis

Ruman Gerst, Anna Medyukhina, Marc Thilo Figge*

SoftwareX Volume 11

Contact us DetailsOpen AccessPDFSupplementCode
  1. GerstEtAl2020_SoftwareX
_publication.json 1 KB _thumbnail.svg 2 MB analysis.zip 45 MB archive.sh <1 KB cells_cxx_misaxx_dag30_noopMT.zip 7 MB cells_cxx_misaxx_dag30_opMT.zip 7 MB cells_cxx_misaxx_noMT_noopMT.zip 7 MB cells_cxx_misaxx_noMT_opMT.zip 7 MB cells_java_imglib2_dag30_noopMT.zip 144 MB cells_java_imglib2_noMT_noopMT.zip 143 MB cells_python_snakemake_dag30_noopMT.zip 5 MB cells_python_snakemake_dag30_opMT.zip 5 MB cells_python_snakemake_noMT_noopMT.zip 5 MB cells_python_snakemake_noMT_opMT.zip 5 MB deconv_cxx_misaxx_dag30_nooptMT.zip 6 GB deconv_cxx_misaxx_dag30_optMT.zip 6 GB deconv_cxx_misaxx_noMT_nooptMT.zip 6 GB deconv_cxx_misaxx_noMT_optMT.zip 6 GB deconv_java_deconvlab2_dag30_noopMT.zip 5 GB deconv_java_deconvlab2_noMT_noopMT.zip 5 GB deconv_python_snakemake_dag30_nooptMT.zip 3 GB deconv_python_snakemake_dag30_optMT.zip 3 GB deconv_python_snakemake_noMT_nooptMT.zip 3 GB deconv_python_snakemake_noMT_optMT.zip 3 GB extract_cells_data.ipynb 44 KB extract_deconv_data.ipynb 13 KB extract_glomeruli_data.ipynb 59 KB extract_microbench_data.ipynb 43 KB extract_microbench_results.ipynb 20 KB full_glomeruli_parameters.ods 19 KB glomeruli_cxx_misaxx_dag30_noopMT.zip 3 GB glomeruli_cxx_misaxx_dag30_opMT.zip 3 GB glomeruli_cxx_misaxx_noMT_nooptMT.zip 1 GB glomeruli_cxx_misaxx_noMT_optMT.zip 1 GB glomeruli_java_imglib2_dag30_noopMT.zip 1 GB glomeruli_python_custom_custom_optMT.zip 1 GB glomeruli_python_snakemake_dag30_noopMT.zip 755 MB glomeruli_python_snakemake_dag30_opMT.zip 685 MB input_deconv_microbench_cells.zip 6 GB input_glomeruli.zip 37 GB microbench_cxx_misaxx_nooptMT.zip 6 GB microbench_cxx_misaxx_optMT.zip 6 GB microbench_java_imglib2_nooptMT.zip 7 GB microbench_python_snakemake_nooptMT.zip 4 GB microbench_python_snakemake_optMT.zip 4 GB