IMFSegNet: Cost-effective and objective quantification of intramuscular fat in histological sections by deep learning

Jan-Philipp Praetorius, Kassandra Walluks, Carl-Magnus Svensson, Dirk Arnold, Marc Thilo Figge

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  1. PraetoriusEtAl2023_ComputStructBiotechnolJ
  2. data
  3. quantification
  4. fat
  5. Oil-Red
  6. Data
#Dataset=GTS01.1_OLD_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 4 KB #Dataset=GTS01.4_OLD_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 4 KB #Dataset=JTS01.3_FemurTest_OilRed-10x_walluk_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 11 KB #Dataset=JTS04.3_PCAControl_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 4 KB #Dataset=S34.3_DC07_OilRed_10x_s3_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 10 KB #Dataset=S35.4_OilRed-Bild-Export-07_s3_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 12 KB #Dataset=S37.3_SHAM_oil Red_10x_s2_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 3 KB #Dataset=S41.1_Control_OilRed_10x_s2_walluks__Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 17 KB #Dataset=S42.4_DC04_OilRed_10x_s4_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 11 KB #Dataset=S43.4_OilRed-Bild-Export-11_s2_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 19 KB #Dataset=S46.3_SHAM_OilRed_10x_s2_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 7 KB #Dataset=S47.4_SHAM_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 15 KB #Dataset=S50.4_SHAM_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 6 KB #Dataset=S51.1_SHAM_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 13 KB #Dataset=S53.1_SHAM_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 6 KB #Dataset=UTS01.4_OP_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 4 KB #Dataset=UTS02.1_OP_OilRed_10x_walluks_Min Threshold B=0_Min Threshold H=0_Max Threshold H=256_Min Threshold S=[ 40 , 200 , [ 40 , 200 ] ]_Max Threshold B=256_Max Threshold S=256.csv 1 KB

A comparative assessment to quantify intramuscular fat in H&E stained tissue sections