Jan-Philipp Praetorius, Kassandra Walluks, Carl-Magnus Svensson, Dirk Arnold, Marc Thilo Figge
A comparative assessment to quantify intramuscular fat in H&E stained tissue sections
Please visit github repository for more information.
datacontains all raw images, predictions and quantifications derived from the images
examplescontains example python scripts for the cross-validation and the corresponding training-test data
modelcontains all embedded image analysis workflows with the corresponding versions for JIPipe, ilastik, kmeans clustering and the IMFSegNet
sheepfatcontains all python scripts used to build and train the SegNet architecture as well as predict with it and the kmeans clustering
SheepFat.jipcontains the JIPipe project file which is used to process the raw images into quantitative results