Intestine-on-chip modeling and automated image analysis reveal a proinflammatory potential of sterile fecal microbiome filtrate from ulcerative colitis patients

Tobias Schaal, Parastoo Akbarimoghaddam, Valentin Wegner, Arndt Steube, Elena Gardey, Adrian Feile, Mohamed Abdelwahab Hassan, Zoltán Cseresnyés, Alexander Mosig, Andreas Stallmach, Marc Thilo Figge, Johannes Stallhofer

Journal of Crohn's and Colitis

This folder contains the data and image analysis codes required to reproduce our findings. More information on how to run the analysis, can be found in Readme.txt!


Contents

Data: The raw microscopic images and biomolecular data

Codes: The image analysis scripts and pipline used for generating the results

Image processing: Output Data from Image Analysis

Image-based measurements: Quantifications derived from the images

Readme.txt: More information on data and codes